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I really can't think of anywhere else to discuss this. After going through the maze with the dogs and entering the elevator, every enemy in the game becomes permanently alert and knows exactly where I am. this also happened when I played the game on rpcs3. but in the walkthrough I watched, the player just proceeds through the level afterwards sneaking as normal.
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Ulthofscp: I really can't think of anywhere else to discuss this.
https://www.gog.com/forum/metal_gear_series#1643661797